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Ttolino F, Bacic A, Quatrano RS, Knight CD, Knox JP: Arabinogalactan
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Op codon was disrupted {with the|using the|with all the
Ttolino F, Bacic A, Quatrano RS, Knight CD, Knox JP: Arabinogalactan proteins are necessary for apical cell extension while in the moss physcomitrella patens. Plant Mobile 2005, seventeen:3051?065. nine. Moller I, Sorensen I, Bernal AJ, Blaukopf C, Lee K, Obro J, Pettolino F, Roberts A, Mikkelsen JD, Knox JP, Bacic A, Willats WG: High-throughput mapping of cell-wall polymers within and among plants applying novel microarrays. Plant J 2007, fifty:1118?128. ten. Matsunaga T, Ishii T, Matsumoto S, Higuchi M, Darvill A, Albersheim P, O'Neill MA: Occurrence on the key mobile wall polysaccharide rhamnogalacturonan II in pteridophytes, lycophytes, and bryophytes. Implications for the evolution of vascular vegetation. Plant Physiol 2002, 134:339?fifty one. eleven. Pe  MJ, Darvill AG, Eberhard S, York WS, O'Neill MA: Moss and liverwort xyloglucans include galacturonic acid and they are structurally distinct in the xyloglucans synthesized by hornworts and vascular crops. Glycobiology 2008, 18:891?04. twelve. Kulkarni AR, Pe MJ, Acvi U, Mazumder K, Urbanowicz BR, Pattathil S, Yin Y, O'Neill MA, Roberts A, Hahn MG, Xu Y, Darvill AG, York WS: The power of land vegetation to synthesize glucuronoxylans predates the evolution of tracheophytes. Glycobiology 2012, 22:439?51. thirteen. Carafa A, Duckett JG, Knox JP, Ligrone R: Distribution of cell-wall xylans in bryophytes and tracheophytes: new insights into basal interrelationships of land crops. New Phytol 2005, 168:231?forty. 14. Teleman A, Lundqvist J, Tjerneld F, Stalbrand H, Dahlman O: Characterization of acetylated 4-O-methylglucuronoxylan isolated from aspen utilizing H-1 and C-13 NMR spectroscopy. Carbohydrate Res 2000, 329:807?15. fifteen. Decou R, Lhernould S, Laurans F, Sulpice E, Leple JC, Dejardin A, Pilate G, Costa G: Cloning and expression evaluation of a wood-associated xylosidase gene (PtaBXL1) in poplar tension wood. Phytochemistry 2009, 70:163?seventy two.sixteen. Zhou GK, Zhong RQ, Richardson EA, Morrison WH, Nairn CJ, Wood-Jones A, Ye ZH: The poplar glycosyltransferase GT47C is functionally conserved with Arabidopsis fragile Fiber8. Plant Cell Physiol 2006, 47:1229?240. 17. Zhou GK, Zhong R, Himmelsbach DS, McPhail BT, Ye ZH: Molecular characterization of PoGT8D and PoGT43B, Two secondary wallassociated glycosyltransferases in poplar. Plant Mobile Physiol 2007, forty eight:689?99. 18. Lee C, Teng [https://www.ncbi.nlm.nih.gov/pubmed/9579280 PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/9579280] Q, Huang WL, Zhong RQ, Ye ZH: The poplar GT8E and GT8F glycosyltransferases are purposeful orthologs of Arabidopsis PARVUS involved in glucuronoxylan biosynthesis. Plant Cell Physiol 2009, 50:1982?987. 19. Lee CH, Zhong RQ, Richardson EA, Himmelsbach DS, McPhail BT, Ye ZH: The PARVUS gene is expressed in cells undergoing secondary wall thickening and is particularly essential for glucuronoxylan biosynthesis. Plant Cell Physiol 2007, 48:1659?672. 20. Lee CH, Teng Q, Huang WL, Zhong RQ, Ye ZH: Down-regulation of PoGT47C expression in poplar benefits in a very lessened glucuronoxylan material and an elevated wooden digestibility by cellulase. Plant Mobile Physiol 2009, 50:1075?089. 21. Lee C, Teng Q, Zhong R, Ye ZH: Molecular dissection of xylan biosynthesis during wooden formation in poplar. Mol Plant 2011, four:730?forty seven. 22. Li Q, Min D, Wang JPY, Peszlen I, Horvath L, Horvath B, Nishimura [https://www.ncbi.nlm.nih.gov/pubmed/23031086 PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/23031086] Y, Jameel H, Chang HM, Chiang VL: Down-regulation of glycosyltransferase 8D genes in populus trichocarpa brought on lessened mechanical toughness and xylan material in wooden.
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Op codon was disrupted while using the reverse primer (F: 50-ggatccttctttctagtgacaatcgg-30 and R: 50cgcggatccacaaatcattgccccaagg-30). The downstream fragment was amplified employing F: 50-ctttcttggaatactcacc-3 and R: 50-ctggaacgcatctagacc-30 primers. The fragments had been cloned separately into the Topo2.1 vector. The cloned downstream fragment was excised with NotI and XbaI and ligated into a modified Topo vector carrying the GUS gene [54]. The upstream PCR fragment was slash with BamHI and released into Topo vector carrying the downstream fragment as well as GUS gene. All restriction enzymes have been FastDigest, Fermentas.GUS stainingBasal stem regions from wild-type Arabidopsis crops measuring 30 mm in height or 6 weeks outdated, 9-week old mutant or complemented crops and 8-week previous Physcomitrella gametophores grown on BCD media were utilized for monosaccharide evaluation. Tissues were collected in eighty  ethanol and stored at -80 till remaining freeze dried (Modulyo, Edwards, West Sussex, British isles). Dried materials was ball milled in a very beadmill (Retsch MM301, Haan, Germany) for two?0s at 30 Hz. Alcoholic beverages insoluble residues (AIR) were attained as beforehand described [39]. The AIR materials was suspended in 0.1 M phosphate buffer, pH7 containing 0.01  sodium azide. Alpha-amylase (Roche, Indianapolis, United states) was additional in a concentration of 1000U for every 1g of mobile wall substance as well as material was digested with gentle shaking for 24h at 37 . The technique was recurring at the time before the pellet was washed first with 0.one M phosphate buffer pH seven, then with water and at last acetone. The material attained was analysed working with the TMS technique [55-57].Tissue sectionsThe composition in the BCD media as well as the progress problems within the light chamber had been as beforehand described [45]. Clumps of subcultured protonema tissue were positioned on BCD plates and grown for 3 weeks in continual light at twenty five  and afterwards moved to quick day ailments (8 hrs light/16 several hours dim at 15 ) and developed for three months. GUS staining was performed by incubating the moss tissue in X-gluc substrate resolution as explained via the Physcobase protocol (http://moss.nibb. ac.jp/). Stained tissue was analyzed using an Olympus SZX12 stereo microscope and images recorded making use of an Olympus XC30 camera.Phenotyping of Ppgt47A knockout linesBasal stem segments had been gathered, set in FAA (five  Acetic acid, 50  ethanol, five  formadehyde in dH2O) and [https://www.ncbi.nlm.nih.gov/pubmed/15810806 PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/15810806] saved at 4  right up until being sectioned applying a vibratome (sixty m thickness) (Leica VT1000S, Germany), stained with 1:2 filtered safranin (one  in 50 ethanol): alcian blue (one  in H20, one  formalin and 0.15  glacial acetic acid), rinsed in H2O and mounted in 50  glycerol [58].Supplemental fileAdditional file one: Determine S1. Physcomitrella patens wild-type colony and Ppgt47a knock out colony. The crops were grown for 6 months on BCD media supplemented with five mM ammonium tartrate. A. Wild-type. B. Ppgt47a. Abbreviations GT: Glycosyltransferase; AGP: Arabinogalactan protein; GX: Glucuronoxylan; IRX: Irregular xylem; CaMV: Cauliflower [https://www.ncbi.nlm.nih.gov/pubmed/27983702 PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/27983702] Mosaic Virus; GlcA: Glucuronic acid; GA3: Gibberellic acid; ABA: Abscisic acid; BAP: 6-benzylamino purine; IAA: Indole-3-acetic acid; AIR: Alcoholic beverages insoluble residues.

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Op codon was disrupted {with the|using the|with all the Op codon was disrupted while using the reverse primer (F: 50-ggatccttctttctagtgacaatcgg-30 and R: 50cgcggatccacaaatcattgccccaagg-30). The downstream fragment was amplified employing F: 50-ctttcttggaatactcacc-3 and R: 50-ctggaacgcatctagacc-30 primers. The fragments had been cloned separately into the Topo2.1 vector. The cloned downstream fragment was excised with NotI and XbaI and ligated into a modified Topo vector carrying the GUS gene [54]. The upstream PCR fragment was slash with BamHI and released into Topo vector carrying the downstream fragment as well as GUS gene. All restriction enzymes have been FastDigest, Fermentas.GUS stainingBasal stem regions from wild-type Arabidopsis crops measuring 30 mm in height or 6 weeks outdated, 9-week old mutant or complemented crops and 8-week previous Physcomitrella gametophores grown on BCD media were utilized for monosaccharide evaluation. Tissues were collected in eighty ethanol and stored at -80 till remaining freeze dried (Modulyo, Edwards, West Sussex, British isles). Dried materials was ball milled in a very beadmill (Retsch MM301, Haan, Germany) for two?0s at 30 Hz. Alcoholic beverages insoluble residues (AIR) were attained as beforehand described [39]. The AIR materials was suspended in 0.1 M phosphate buffer, pH7 containing 0.01 sodium azide. Alpha-amylase (Roche, Indianapolis, United states) was additional in a concentration of 1000U for every 1g of mobile wall substance as well as material was digested with gentle shaking for 24h at 37 . The technique was recurring at the time before the pellet was washed first with 0.one M phosphate buffer pH seven, then with water and at last acetone. The material attained was analysed working with the TMS technique [55-57].Tissue sectionsThe composition in the BCD media as well as the progress problems within the light chamber had been as beforehand described [45]. Clumps of subcultured protonema tissue were positioned on BCD plates and grown for 3 weeks in continual light at twenty five and afterwards moved to quick day ailments (8 hrs light/16 several hours dim at 15 ) and developed for three months. GUS staining was performed by incubating the moss tissue in X-gluc substrate resolution as explained via the Physcobase protocol (http://moss.nibb. ac.jp/). Stained tissue was analyzed using an Olympus SZX12 stereo microscope and images recorded making use of an Olympus XC30 camera.Phenotyping of Ppgt47A knockout linesBasal stem segments had been gathered, set in FAA (five Acetic acid, 50 ethanol, five formadehyde in dH2O) and PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/15810806 saved at 4 right up until being sectioned applying a vibratome (sixty m thickness) (Leica VT1000S, Germany), stained with 1:2 filtered safranin (one in 50 ethanol): alcian blue (one in H20, one formalin and 0.15 glacial acetic acid), rinsed in H2O and mounted in 50 glycerol [58].Supplemental fileAdditional file one: Determine S1. Physcomitrella patens wild-type colony and Ppgt47a knock out colony. The crops were grown for 6 months on BCD media supplemented with five mM ammonium tartrate. A. Wild-type. B. Ppgt47a. Abbreviations GT: Glycosyltransferase; AGP: Arabinogalactan protein; GX: Glucuronoxylan; IRX: Irregular xylem; CaMV: Cauliflower PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/27983702 Mosaic Virus; GlcA: Glucuronic acid; GA3: Gibberellic acid; ABA: Abscisic acid; BAP: 6-benzylamino purine; IAA: Indole-3-acetic acid; AIR: Alcoholic beverages insoluble residues.