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Dentified in mammals, all of which have four to five exons. The Drosophila genome encodes eight PANX/INX genes with three to eight exons [109]. Twenty-five PANX/INX genes are present in the C. elegans genome, with 3?1 exons [110]. In Aplysia californica, 18 PANX/INX genes have been identified, with 1?0 exons (figure 4). Non-bilaterian metazoans have the most unusual complements of PANX/INX genes. The A. queenslandica [30] and T. adhaerens [29] genomes and the publically available sponge transcriptome data [111] have no identified pannexins. Cnidarians appear to have both losses and expansions of the PANX/INX genes. The hydrozoan Hydra magnipapillata has at least 19 pannexins [112,113]. By contrast, the anthozoan Nematostella vectensis has only one recognized PANX/INX gene (figure 4 and electronic supplementary material, figure S1), which may be involved in the electrical coupling between blastomeres in embryos [114]. However, no PANX/INX genes have been detected in the genomes of three other anthozoans, Aiptasia [115], Acropora digitifera [116] and Stylophora pistillata. There are also no identified PANX/INX genes in the scyphozoan Cyanea capillata (based on our transcriptome profiling). It is still unknown whether the cubozoans have PANX/INX genes. Gap junction proteins (both innexins and connexions) tend to be present in multiple copies in almost all metazoans, with the exception of Nematostella. Interestingly, the predicted Nematostella PANX/INX protein is clustered at the base of the chordate clade (electronic supplementary material, figure S1; this has also been observed by Abascal  Zardoya [106]). Given these observations, it has been suggested that there has been a horizontal transfer of a PANX/INX gene from an ancestral chordate to Nematostella [106]. In contrast to the cnidarians, all sequenced ctenophores have an enormous diversity of electrical synapses or gaprstb.royalsocietypublishing.org Phil. Trans. R. Soc. B 371:junctions [28], forming a distinct branch in tree topology (electronic supplementary material, figure S1). However, no connexins are encoded in the genomes of Pleurobrachia and Mnemiopsis, or in any of the other ctenophore transcriptomes analysed. In general, the ctenophore PANX/INX genes contain more exons than their orthologues in Hydrozoa and bilaterians (the number of exons varies from 1 to 14; figure 4). Although both P. bachei and M. leidyi have 12 PANX/INX genes in their genomes, only four of them form genealogical sister pairs between species (electronic supplementary material, figure S1), further suggesting the widespread lineage-specific radiation and parallel [https://www.medchemexpress.com/SB-431542.html SB-431542 MedChemExpress] evolution of this family. Functional analysis of the electrical synapses in ctenophores is in its infancy [70,117]. Interestingly, the PANX/ INX genes are one of the most highly expressed transcripts in the adult aboral organ of P. bachei (figure 5d; [28]), but they are also expressed in the combs and conductive tracts and in the neuron-like subepithelial cells. Gap junctions have previously been identified in the ciliated grooves by electron microscopy [95], which run from the aboral organ to the first comb plate of each comb row and through the endoderm of the meridional canals [117]. These data suggest that a significant fraction of the synaptic transmission in the conductive tracts and the aboral organ is electrical. In addition to conducting electrical synapses, gap junctions also mediate mechanoreception [118] and the direct exchange of sma.
Spectra were analyzed with TurboSEQUEST, version 3.1 (28). All spectra were searched against a database of deduced open reading frames (ORFs) of the B. hermsii genome, including the chromosome (GenBank accession number CP00048), plasmid sequences reported previously by Dai et al. (29), and the 174-kb large plasmid reported previously by Campeau Miller et al. (GenBank accession number HM008709) (16). DNA extractions and PCR. Borrelia genomic DNA was isolated from harvested cultures, blood, or tissue with a Qiagen (Valencia, CA) DNeasy Blood and Tissue kit, as described previously (30). The DNA target was amplified with Phusion high-fidelity DNA polymerase (New England BioLabs, Ipswich, MA). For the partial or full-length bha007 sequence, the forward and reverse primers were 5=-ATGCAATTGAAAAAACAATGTT T-3= and 5=-CCTATGCCTGTTCTTTTTGC-3= or 5=-ATGCAATTGAAA AAACAATG-3= and 5=-TTATTTTAAGGCTTTCTTGAT-3=, respectively. The PCR conditions were as follows: 3 min at 95  followed by 30 cycles of 1 min at 95 , 1 min at 54  (partial) or 56  (full length), and 1 min at 75  and then a final extension step for 7 min at 75 . PCR products or cloned inserts in plasmid vector pCR2.1 in E. coli Top10F cells were sequenced over both strands by Genewiz (South Plainfield, NJ). Quantitative PCR using a Rotorgene 6000 thermal cycler (Qiagen, Valencia, CA) and primers and probe for the 16S rRNA gene of B. hermsii was performed as previously described (30). PCR results were normalized for total DNA concentrations of the samples; a positive result was 5 gene copies per g tissue DNA. Recombinant protein. The protein-encoding bha007 sequence was modified by the replacement of the signal peptide with a histidine tag at the N terminus and substitution of E. coli codon usage. Gene synthesis, protein expression in E. coli, and protein purification of the Borrelia recombinant BHA007 protein were performed by GenScript (Piscataway, NJ). Protein purity was 70 , as estimated by using a Coomassie bluestained PAGE gel. Recombinant Vlp7, FlaB, and factor H-binding protein A (FhbA) of B. hermsii strain HS1 were cloned with a replacement of their signal peptide by a 6 histidine tag, expressed in E. coli, and purified as described previously (31). Recombinant protein purity was estimated to be 80 to 90 . Protein concentrations were determined by a bicinchoninic acid protein assay kit (Pierce, Rockford, IL). Microagglutination assay. Serum or antibody preparations were 2-fold serially diluted 1:5 in BSK II medium, with a final spirochete cell density of 108 spirochetes/ml. After incubation for 1 h at 37 , 10 l of the suspension was viewed under a coverslip by phase-contrast microscopy at a 400 magnification. A positive agglutination reaction at a given dilution was 50  of the cells in the suspension in aggregates of 2 cells; the titer was the highest dilution of serum with a positive reaction. Monoclonal antibody H5332 for OspA (32) was a positive control for the agglutination of B. burgdorferi, and monoclonal antibody H4825 (see above) was a positive control for the agglutination of Vtp B. hermsii. Immunofluorescence assays. Thin smears on glass slides of blood from B. hermsii-infected mice were fixed in methanol, dried, and then blocked for 1 h at 22  with PBS plus 2  bovine serum albumin (BSA) and 0.05  Triton X-100.
 

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Dentified in mammals, all of which have four to five exons. The Drosophila genome encodes eight PANX/INX genes with three to eight exons [109]. Twenty-five PANX/INX genes are present in the C. elegans genome, with 3?1 exons [110]. In Aplysia californica, 18 PANX/INX genes have been identified, with 1?0 exons (figure 4). Non-bilaterian metazoans have the most unusual complements of PANX/INX genes. The A. queenslandica [30] and T. adhaerens [29] genomes and the publically available sponge transcriptome data [111] have no identified pannexins. Cnidarians appear to have both losses and expansions of the PANX/INX genes. The hydrozoan Hydra magnipapillata has at least 19 pannexins [112,113]. By contrast, the anthozoan Nematostella vectensis has only one recognized PANX/INX gene (figure 4 and electronic supplementary material, figure S1), which may be involved in the electrical coupling between blastomeres in embryos [114]. However, no PANX/INX genes have been detected in the genomes of three other anthozoans, Aiptasia [115], Acropora digitifera [116] and Stylophora pistillata. There are also no identified PANX/INX genes in the scyphozoan Cyanea capillata (based on our transcriptome profiling). It is still unknown whether the cubozoans have PANX/INX genes. Gap junction proteins (both innexins and connexions) tend to be present in multiple copies in almost all metazoans, with the exception of Nematostella. Interestingly, the predicted Nematostella PANX/INX protein is clustered at the base of the chordate clade (electronic supplementary material, figure S1; this has also been observed by Abascal Zardoya [106]). Given these observations, it has been suggested that there has been a horizontal transfer of a PANX/INX gene from an ancestral chordate to Nematostella [106]. In contrast to the cnidarians, all sequenced ctenophores have an enormous diversity of electrical synapses or gaprstb.royalsocietypublishing.org Phil. Trans. R. Soc. B 371:junctions [28], forming a distinct branch in tree topology (electronic supplementary material, figure S1). However, no connexins are encoded in the genomes of Pleurobrachia and Mnemiopsis, or in any of the other ctenophore transcriptomes analysed. In general, the ctenophore PANX/INX genes contain more exons than their orthologues in Hydrozoa and bilaterians (the number of exons varies from 1 to 14; figure 4). Although both P. bachei and M. leidyi have 12 PANX/INX genes in their genomes, only four of them form genealogical sister pairs between species (electronic supplementary material, figure S1), further suggesting the widespread lineage-specific radiation and parallel SB-431542 MedChemExpress evolution of this family. Functional analysis of the electrical synapses in ctenophores is in its infancy [70,117]. Interestingly, the PANX/ INX genes are one of the most highly expressed transcripts in the adult aboral organ of P. bachei (figure 5d; [28]), but they are also expressed in the combs and conductive tracts and in the neuron-like subepithelial cells. Gap junctions have previously been identified in the ciliated grooves by electron microscopy [95], which run from the aboral organ to the first comb plate of each comb row and through the endoderm of the meridional canals [117]. These data suggest that a significant fraction of the synaptic transmission in the conductive tracts and the aboral organ is electrical. In addition to conducting electrical synapses, gap junctions also mediate mechanoreception [118] and the direct exchange of sma.